A method to access the simulation hyperparameters

The hyperparameters like number of models, range from which parameters are to be sampled, simulation time etc.

sracipeConfig(.object)

# S4 method for RacipeSE
sracipeConfig(.object)

Arguments

.object	RacipeSE object

Value

list

Examples

RacipeSet <- RacipeSE()
data("demoCircuit")
sracipeCircuit(RacipeSet) <- demoCircuit
#> circuit file successfully loaded
sracipeConfig(RacipeSet)
#> $simParams
#>         numModels    simulationTime integrateStepSize        printStart 
#>           2000.00             50.00              0.02             50.00 
#>               nIC   outputPrecision       rkTolerance        paramRange 
#>              1.00             12.00              0.01            100.00 
#>     printInterval 
#>             10.00 
#> 
#> $stochParams
#>             nNoise noiseScalingFactor       initialNoise        scaledNoise 
#>                0.0                0.5               50.0                0.0 
#>          shotNoise 
#>                0.0 
#> 
#> $hyperParams
#>      prodRateMin      prodRateMax       degRateMin       degRateMax 
#>           1.0000         100.0000           0.1000           1.0000 
#>    foldChangeMin    foldChangeMax      hillCoefMin      hillCoefMax 
#>           1.0000         100.0000           1.0000           6.0000 
#> interactionTypes  thresholdModels         sdFactor 
#>           3.0000        5000.0000           0.5658 
#> 
#> $options
#>      anneal scaledNoise       genIC   genParams   integrate 
#>       FALSE       FALSE        TRUE        TRUE        TRUE 
#> 
rm(RacipeSet)