Initialize the circuit

Initialize the circuit from a topology file or a data.frame A typical topology file looks like

Source	Target	Type
geneA	geneB	2
geneB	geneC	1
geneB	geneA	2

Here the regulation type is specified by number - activation: 1, inhibition: 2

sracipeCircuit(.object) <- value

# S4 method for RacipeSE
sracipeCircuit(.object) <- value

Arguments

.object	RacipeSE object
value	data.frame containing the circuit information

Value

data.frame

Related Functions

sracipeSimulate, sracipeKnockDown, sracipeOverExp, sracipePlotData

Examples

RacipeSet <- RacipeSE()
data("demoCircuit")
sracipeCircuit(RacipeSet) <- demoCircuit
#> circuit file successfully loaded
sracipeCircuit(RacipeSet)
#>   Source Target Type
#> 1      A      A    1
#> 2      B      A    2
#> 3      A      B    2
#> 4      B      B    1
rm(RacipeSet, demoCircuit)
#> Warning: object 'demoCircuit' not found